Biol 1362 End Game

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First and for most, I have to say, ” I Survived Biochemistry.” I have approached the end of my BIOL 1362 blog. To say this was was best course so far in the University of the West Indies is an understatement. I have grown to appreciate and understand the science of biochemistry. although it was a tough road, the journey was well spent and exciting. Though the “biggest” obstacle is approaching i.e. Finally, I am confident that I will deliver a passing grade and more. Mr Mathew, hats off to you. At first I had the impression of being overwhelmed will all his assignments but I now see the strategy behind it and I must say it works fantastically. I have earned many skill with all his assignments such as researching, documenting, paraphrasing and summarizing as well as group work just to name a few. I look forward in entering Mr. Mathews second year class though it seems that it is going to be even more challenging. So Mr. Mathew I say bring it on.

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Thank you all for taking the time to read my posts and giving exclusive feedback.

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Nucleosides, Nucleotides and Nucleic Acids

1) A nucleoside (with an s) consists of a nitrogenous base covalently attached to a (ribose or deoxyribose) sugar but without the phosphate group.

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2) A nucleotide (with a t) consists of a nitrogenous base, a sugar, and a phosphate group. So, a nucleotide is a “nucleoside mono-phosphate.”

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3) A nucleic acid contains a chain of nucleotides covalently linked together to form a sugar-phosphate backbone with protruding nitrogenous bases. In RNA (ribonucleic acid), the sugar groups are ribose, whereas in DNA (deoxyribonucleic acid), deoxyribose sugars are present instead of ribose.

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reference

“Nucleic Acid VS Nucleotide,” Newton; accessed on april13,2013. http://www.newton.dep.anl.gov/askasci/mole00/mole00296.htm.

Who say Slice I mean Splice

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Gene splicing is just what it sounds like: cutting the DNA of a gene to add base pairs. Contrary to the immediate image, however, no sharp instruments are involved; rather, everything is done chemically.

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Chemicals called restriction enzymes act as the scissors to cut the DNA. Thousands of varieties of restriction enzymes exist, each recognizing only a single nucleotide sequence. Once it finds that sequence in a strand of DNA, it attacks it and splits the base pairs apart, leaving single helix strands at the end of two double helixes. Scientists are then free to add any genetic sequences they wish into the broken chain and, afterwards, the chain is repaired (as a longer chain with the added DNA) with another enzyme called ligase. Hence, any form of genetic material can be spliced together; bacteria and chicken DNA can, and have been, combined. More often, though, splicing is used for important efforts such as the production of insulin and growth hormone to cure human maladies.With modern splicing techniques, enough insulin can be produced for all diabetics. The insulin-producing genes from human DNA are spliced into plasmid DNA; the plasmids are then allowed to infect bacteria, and, as the bacteria multiply, large amounts of harvestable insulin are produced. Splicing has other practical medicinal uses, too. In July of 1996, a 68-year-old woman became the first patient to be treated for arthritis (a disease which affects an estimated 2.1 million Americans) via gene therapy. At the University of Pittsburgh, therapeutic DNA that blocks the production of a specific protein (IL-1) that causes arthritis pain was injected into two of her knuckles.

reference;

“The Gene School,” Think Quest; accessed on April 13, 2013.http://library.thinkquest.org/19037/therapy2.html

Nucleotides and Nucleic Acids WTH are they

What Are Organic Molecules?
Organic molecules contain carbon-hydrogen bonds, are found in living things and can be very large molecules. The major classes of organic macromolecules are  carbohydrates, proteins, lipids and nucleic acids.
 What Are Nucleotides really?
Nucleotides are monomers (small molecules) that are the building blocks of nucleic acids. Each nucleotide, and consists of 3 portions:
-a pentose sugar called ribose
-one or more phosphate groups
-one of five cyclic nitrogenous bases
Some nucleotides are put together to form nucleic acid (DNA & RNA) macromolecules, whereas others function on their own. ​
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Nucleic Acid Structure
Nucleotides can be linked together by covalent bonds between the phosphate of one nucleotide and the sugar of next. These linked monomers become the phosphate-sugar backbone of nucleic acids. The nitrogenous bases extend out from this phosphate-sugar backbone like teeth of a comb.
Deoxyribonucleic Acid (DNA)
DNA (deoxyribonucleic acid) is the genetic material, the original blueprint, inside each biological cell. The molecule is double-stranded and twisted, like a spiral staircase, with the two sugar-phosphate chains as the side rails, and the nitrogenous base pairs, linked by hydrogen bonds, forming the rungs. In addition to linking the bases together, hydrogen bonding twists the phosphate-sugar backbones into a helix, thus DNA is a double helix.There are four different types of nitrogenous bases that can be found in a DNA molecule: adenine (A), guanine (G), cytosine (C) and thymine (T). Adenine and guanine are larger, double ring nitrogenous bases called purines. Cytosine and thymine are smaller, single ring nitrogenous bases called pyrimidines. When bases pair up between the two DNA strands, a purine always pairs with a pyrimidine. Specifically adenine (A) and thymine (T) pair up, and cytosine (C) and guanine (G) pair up. These bases are attracted to each other through hydrogen bonding.When the DNA molecule is inactive, the bases are linked by these hydrogen bonds and the molecule is in its spiral-shaped state. When DNA is being used—either being copied (a process called replication) or being employed to build proteins (involving the processes of transcription and translation)—the DNA molecule must be opened up, essentially “unzipped” between the bases.
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Ribonucleic Acids (RNA)
In living organisms, RNA is a single stranded nucleic acid molecule. In viruses, non-living infectious particles, RNA can be single or double stranded.There are four different types of nitrogenous bases found in an RNA molecule: adenine (A), guanine (G), cytosine (C) and uracil (U). In RNA, uracil takes the place of the thymine found in DNA.
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When RNA bases are laid down to build an RNA molecule, DNA is unzipped, and the new RNA molecule made is compliment of the DNA template. For example, if the DNA strand has the following bases, in this order, ATTGCACT, the new RNA molecule being made will have the base sequence UAACGTGA. After the RNA segment is made, the DNA zips back up and the RNA floats off to carry out its function in the cell.Genetic information copied from DNA is used to build three types of RNA:
1) Ribosomal RNA – The Protein Factories: Most of the RNA in cells is part of the structure of small cellular organelles known as ribosomes, the protein factories of the cells.
2) Messenger RNA – The Genetic Blueprint: Messenger RNA is a copy of the genetic information that was transcribed from the cell’s original blueprint, DNA. This copy of the genetic information is brought to the ribosome and used as instructions for building proteins.
3) Transfer RNA – The Amino Acid Suppliers: Transfer RNA is also part of the process of building proteins. Like a little truck, tRNA brings the amino acid to the ribosome. Which amino acid it brings depends on which was coded for in the mRNA instructions. At the ribosome, these amino acids are joined together to form proteins.
ATP: The Energy Transfer Molecule
Adenosine 5′-triphosphate (ATP) is a multifunctional nucleotide, most important as the “molecular currency” of intracellular energy transfer. Like tiny rechargeable batteries, ATP molecules transport chemical energy within a biological cell. These molecules can move energy around because the phosphate bonds contain a lot of potential energy, which is released when they are broken.During photosynthesis and cellular respiration, ATP is produced from ADP (adenosine diphosphate), an inorganic phosphate and added energy. ATP energy is consumed by a multitude of cellular processes.
 Chemical Structure of ATP (Adenosine Triphosphate
So how was my presentation:url-3
reference:
“What are Nucleotides and Nucleic Acids,” Science Prof Online; accessed on April 13, 2013.http://www.scienceprofonline.org/chemistry/nucleotides-nucleic-acids-atp-rna-dna.html

Lipids

Relatively large biological molecule that mostly does not dissolve in water.Lipids include fats, oils, cholesterol, a number of steroid hormones, the major constituents of cell membranes, etc.Lipids are predominantly hydrophobic substances, though can have hydrophilic portions as well. An example of the latter are lipids associated with membranes, that is, lipid bilayers, include phospholipids and the molecule, cholesterol.Unlike proteins, carbohydrates, and nucleic acids, lipids are less homogenous in terms of their structures. In particular, lipids do not have a consistent subunit from which they are polymerized but instead are categorized together as a group based upon their relative inability to dissolve in aqueous solutions. That is, they are oil-like in the generic sense of that term. The video placed a whole new spin on the age of rap and showed that is just not for young persons.Furthermore, while being enjoyable it also teaches one about lipids in a fun interactive session.

Reference

“Michael Eskin Lipids Rap,” Youtube Video, 2:52,posted by”Lipids Get a Real Bad Rap: It’s Just Not Fair,” May 17,2012, http://www.youtube.com/watch?v=6lrG65DdBl8